From ff406cc09c8916292c7901860c1326c54380ee55 Mon Sep 17 00:00:00 2001 From: nwickel Date: Thu, 2 May 2024 18:53:17 +0200 Subject: [PATCH] Added R and Python versions and package info to README --- README.md | 155 ++++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 155 insertions(+) diff --git a/README.md b/README.md index 3e131cd..122b45f 100644 --- a/README.md +++ b/README.md @@ -80,3 +80,158 @@ found clusters of the navigation types were further investigated with process mining techniques in R (`12_dfgs-case-clusters.R`) and Python (`13_pm-case-clusters.py`). +# Software versions + +## R + +The following gives the output of `sessionInfo()` with all relevant +packages attached. + +``` +R version 4.3.3 (2024-02-29 ucrt) +Platform: x86_64-w64-mingw32/x64 (64-bit) +Running under: Windows 10 x64 (build 19045) + +Matrix products: default + + +locale: +[1] LC_COLLATE=German_Germany.utf8 +[2] LC_CTYPE=German_Germany.utf8 +[3] LC_MONETARY=German_Germany.utf8 +[4] LC_NUMERIC=C +[5] LC_TIME=German_Germany.utf8 + +time zone: Europe/Berlin +tzcode source: internal + +attached base packages: +[1] grid stats graphics grDevices utils +[6] datasets methods base + +other attached packages: + [1] igraph_2.0.3 DiagrammeR_1.0.11 partykit_1.2-20 + [4] mvtnorm_1.2-4 libcoin_1.0-10 rpart_4.1.23 + [7] rgl_1.3.1 smacof_2.1-6 e1071_1.7-14 +[10] colorspace_2.1-0 plotrix_3.8-4 vioplot_0.4.0 +[13] zoo_1.8-12 sm_2.2-6.0 cluster_2.1.6 +[16] factoextra_1.0.7 ggplot2_3.5.0 dplyr_1.1.4 +[19] pbapply_1.7-2 petrinetR_0.3.0 processmapR_0.5.3 +[22] eventdataR_0.3.1 edeaR_0.9.4 bupaR_0.5.4 +[25] lattice_0.22-6 devtools_2.4.5 usethis_2.2.3 +[28] mtt_0.0-1 + +loaded via a namespace (and not attached): + [1] RColorBrewer_1.1-3 rstudioapi_0.16.0 + [3] jsonlite_1.8.8 shape_1.4.6.1 + [5] magrittr_2.0.3 jomo_2.7-6 + [7] nloptr_2.0.3 rmarkdown_2.26 + [9] fs_1.6.3 vctrs_0.6.5 + [11] heplots_1.6.2 memoise_2.0.1 + [13] minqa_1.2.6 base64enc_0.1-3 + [15] htmltools_0.5.8.1 forcats_1.0.0 + [17] polynom_1.4-1 weights_1.0.4 + [19] broom_1.0.5 Formula_1.2-5 + [21] mitml_0.4-5 htmlwidgets_1.6.4 + [23] plotly_4.10.4 lubridate_1.9.3 + [25] cachem_1.0.8 mime_0.12 + [27] lifecycle_1.0.4 iterators_1.0.14 + [29] pkgconfig_2.0.3 Matrix_1.6-5 + [31] R6_2.5.1 fastmap_1.1.1 + [33] shiny_1.8.1.1 digest_0.6.35 + [35] shinyTime_1.0.3 pkgload_1.3.4 + [37] ellipse_0.5.0 Hmisc_5.1-2 + [39] fansi_1.0.6 timechange_0.3.0 + [41] nnls_1.5 gdata_3.0.0 + [43] abind_1.4-5 httr_1.4.7 + [45] compiler_4.3.3 proxy_0.4-27 + [47] remotes_2.5.0 withr_3.0.0 + [49] doParallel_1.0.17 htmlTable_2.4.2 + [51] backports_1.4.1 carData_3.0-5 + [53] pkgbuild_1.4.4 pan_1.9 + [55] MASS_7.3-60.0.1 sessioninfo_1.2.2 + [57] gtools_3.9.5 tools_4.3.3 + [59] foreign_0.8-86 httpuv_1.6.15 + [61] nnet_7.3-19 glue_1.7.0 + [63] inum_1.0-5 nlme_3.1-164 + [65] promises_1.3.0 checkmate_2.3.1 + [67] generics_0.1.3 gtable_0.3.4 + [69] class_7.3-22 tidyr_1.3.1 + [71] data.table_1.15.4 hms_1.1.3 + [73] car_3.1-2 xml2_1.3.6 + [75] utf8_1.2.4 ggrepel_0.9.5 + [77] foreach_1.5.2 pillar_1.9.0 + [79] stringr_1.5.1 later_1.3.2 + [81] splines_4.3.3 survival_3.5-8 + [83] tidyselect_1.2.1 miniUI_0.1.1.1 + [85] knitr_1.46 gridExtra_2.3 + [87] xfun_0.43 visNetwork_2.1.2 + [89] stringi_1.8.3 lazyeval_0.2.2 + [91] boot_1.3-30 evaluate_0.23 + [93] codetools_0.2-20 wordcloud_2.6 + [95] tibble_3.2.1 cli_3.6.2 + [97] xtable_1.8-4 munsell_0.5.1 + [99] candisc_0.8-6 Rcpp_1.0.12 +[101] parallel_4.3.3 ellipsis_0.3.2 +[103] profvis_0.3.8 urlchecker_1.0.1 +[105] lme4_1.1-35.3 glmnet_4.1-8 +[107] viridisLite_0.4.2 ggthemes_5.1.0 +[109] scales_1.3.0 purrr_1.0.2 +[111] rlang_1.1.3 mice_3.16.0 +``` + + +## Python + +The Python version used is `Python 3.12.0`. The following gives the output +of `pip list` for the virtual environment all analyses have been run in. + +``` +Package Version +----------------- ------------ +asttokens 2.4.1 +colorama 0.4.6 +contourpy 1.2.0 +cycler 0.12.1 +decorator 5.1.1 +deprecation 2.1.0 +executing 2.0.1 +fonttools 4.46.0 +graphviz 0.20.1 +intervaltree 3.1.0 +ipython 8.18.1 +jedi 0.19.1 +joblib 1.3.2 +kiwisolver 1.4.5 +lxml 4.9.3 +matplotlib 3.8.2 +matplotlib-inline 0.1.6 +networkx 3.2.1 +numpy 1.26.2 +packaging 23.2 +pandas 2.1.3 +parso 0.8.3 +Pillow 10.1.0 +pip 24.0 +pm4py 2.7.8.4 +prompt-toolkit 3.0.41 +PuLP 2.8.0 +pure-eval 0.2.2 +pydotplus 2.0.2 +Pygments 2.17.2 +pyparsing 3.1.1 +python-dateutil 2.8.2 +pytz 2023.3.post1 +scikit-learn 1.4.0 +scipy 1.11.4 +six 1.16.0 +sortedcontainers 2.4.0 +stack-data 0.6.3 +StringDist 1.0.9 +threadpoolctl 3.2.0 +tqdm 4.66.1 +traitlets 5.14.0 +tzdata 2023.3 +wcwidth 0.2.12 +``` +