Fixed add_trace_moves() so it works with complete data set; first version that creates log event file for complete data set without crashing

code/02_preprocessing.R

@@ -13,13 +13,13 @@ dat0$glossar <- ifelse(dat0$artwork == "glossar", 1, 0)
 dat <- subset(dat0, !(dat0$event %in% c("Start Application",
                                         "Show Application")))
 
-#save(dat, file = "tmp/dat.RData")
+save(dat, file = "tmp/dat.RData")
 
 # Add trace variable #####################################################
 cat("########## Adding trace variable... ##########", "\n")
 dat1 <- add_trace(dat)
 
-#save(dat1, file = "tmp/dat1.RData")
+save(dat1, file = "tmp/dat1.RData")
 
 # Close events
 cat("########## Closing events... ##########", "\n")
@@ -44,7 +44,7 @@ dat2 <- dat2[!is.na(dat2$date.start), ]
 rownames(dat2) <- NULL
 # TODO: Throw warning about this
 
-#save(dat2, file = "tmp/dat2.RData")
+save(dat2, file = "tmp/dat2.RData")
 
 # Add case variable ######################################################
 cat("########## Adding case and eventId variables... ##########", "\n")
@@ -61,23 +61,25 @@ dat3 <- dat3[, c("fileId.start", "fileId.stop", "eventId", "case",
                  "scaleSize", "rotation.start", "rotation.stop",
                  "rotationDegree")]
 
-#save(dat3, file = "tmp/dat3.RData")
+save(dat3, file = "tmp/dat3.RData")
 
 # Add trace for move events ##############################################
-cat("########## Adding trace variable for move events... ##########", "\n")
+cat("\n########## Adding trace variable for move events... ##########", "\n")
 dat4 <- add_trace_moves(dat3)
 
-#save(dat4, file = "tmp/dat4.RData")
+save(dat4, file = "tmp/dat4.RData")
 
 # Add topics: file names and topics ######################################
 cat("########## Adding information about topics... ##########", "\n")
 artworks <- unique(dat4$artwork)
+# remove artworks without XML information
+artworks <- artworks[!artworks %in% c("504", "505")]
 topics <- extract_topics(artworks, pattern = paste0(artworks, ".xml"),
                          path = "../data/ContentEyevisit/eyevisit_cards_light/")
 
 dat5 <- add_topic(dat4, topics = topics)
 
-#save(dat5, file = "tmp/dat5.RData")
+save(dat5, file = "tmp/dat5.RData")
 
 # TODO: Replace artwork with informative strings
 

code/functions.R

@@ -262,6 +262,7 @@ add_case <- function(data, cutoff = 20) {
   data$timediff <- NULL
   data
 }
+# TODO: Is this faster with lapply()?
 
 ###########################################################################
 
@@ -269,14 +270,20 @@ add_case <- function(data, cutoff = 20) {
 
 add_trace_moves <- function(data) {
 
-  cases <- unique(data$case)
+  pbapply::pboptions(style = 3, char = "=")
-  artworks <- unique(data$artwork)[unique(data$artwork) != "glossar"]
+
   trace_max <- max(data$trace, na.rm = TRUE)
 
-  subdata_list <- split(data, ~ artwork + case)
+  #subdata_art <- split(data, ~ artwork)
-  subdata_list <- subdata_list[which(sapply(subdata_list, nrow) != 0)]
+  subdata_case <- split(data, ~ case)
 
-  pbapply::pboptions(style = 3, char = "=")
+  #subdata_list <- split(data, ~ artwork + case)
+  # --> does not work with complete data set
+  cat("Splitting data...", "\n")
+  subdata_list <- pbapply::pblapply(subdata_case, split, f = ~artwork)
+  subdata_list <- unlist(subdata_list, recursive = FALSE)
+
+  cat("Adding trace...", "\n")
   subdata_trace <- pbapply::pblapply(subdata_list,
         function(x) {
           trace_max <<- trace_max + 1
@@ -322,9 +329,6 @@ add_trace_subdata <- function(subdata, max_trace) {
   subdata
 }
 
-#system.time(dat4a <- add_trace_moves2(dat3))
-#system.time(dat4b <- add_trace_moves(dat3))
-
 
 ###########################################################################
 
@@ -383,6 +387,7 @@ extract_topics <- function(artworks, pattern, path) {
 
 add_topic <- function(data, topics) {
 
+  artworks <- unique(data$artwork)
   tab_art <- lapply(artworks,
                function(x) names(table(data$topicNumber[data$artwork == x])))
   names(tab_art) <- artworks
@@ -412,8 +417,9 @@ add_topic <- function(data, topics) {
 
   dat_topic <- lapply(dat_label, set_topic)
 
-  out <- do.call(rbind, dat_topic)
+  #out <- do.call(rbind, dat_topic)
-  out <- out[order(out$date.start, out$fileId.start), ]
+  out <- dplyr::bind_rows(dat_topic)
+  out <- out[order(out$fileId.start, out$date.start, out$timeMs.start), ]
   rownames(out) <- NULL
   out
 }