Overview for 6th session
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06_wrap_up/README.md
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06_wrap_up/README.md
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# Last session: Wrap-up
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How to apply all we learned this semester to archiving our research data at the
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IWM:
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* Show how to fill in the input mask
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* Details on how to prepare data and folders
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Show slide set "How to know what to archive"
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* How to upload research data
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* How to create new version of research data
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* How to update meta data
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* Explain the "Status" mechanism
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* Show that only one person per data set has access to the meta data entry
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06_wrap_up/howto_what-to-archive.tex
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06_wrap_up/howto_what-to-archive.tex
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\documentclass[aspectratio=169]{beamer}
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\usepackage{tikz}
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\usetikzlibrary{fit}
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\usepackage{listings}
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\usepackage[utf8,latin1]{inputenc}
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\usepackage{multirow}
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\usepackage{color, colortbl}
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\usepackage{fontawesome5} % get icons
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\makeatletter \def\newblock{\beamer@newblock} \makeatother
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\beamertemplatenavigationsymbolsempty
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\setbeamertemplate{itemize items}[circle]
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\setbeamertemplate{section in toc}[circle]
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\mode<beamer>{\setbeamercolor{math text displayed}{fg=iwmgrau}}
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\setbeamercolor{block body}{bg=iwmorange!50!white}
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\setbeamercolor{block title}{fg=white, bg=iwmorange}
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\definecolor{iwmorange}{RGB}{255,105,0}
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\definecolor{iwmgray}{RGB}{67,79,79}
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\definecolor{iwmblue}{RGB}{60,180,220}
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\definecolor{iwmpurple}{RGB}{120,0,75}
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\definecolor{iwmorange}{RGB}{255,105,0}
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\definecolor{iwmgrau}{RGB}{67,79,79}
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\setbeamercolor{title}{fg=iwmorange}
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\setbeamercolor{frametitle}{fg=iwmorange}
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\setbeamercolor{structure}{fg=iwmorange}
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\setbeamercolor{normal text}{fg=iwmgrau}
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\setbeamercolor{author}{fg=iwmgrau}
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\setbeamercolor{date}{fg=iwmgrau}
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\lstset{language=bash,%
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literate={Ü}{{\"U}}1
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{ü}{{\"u}}1,
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backgroundcolor=\color{iwmgrau!15!white},
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basicstyle=\ttfamily\color{iwmgrau},
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frame=none,
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basicstyle=\ttfamily\color{iwmgrau},
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commentstyle=\slshape\color{iwmgrau},
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keywordstyle=\bfseries\color{iwmgrau},
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identifierstyle=\color{iwmgrau},
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stringstyle=\color{iwmgrau},
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numbers=none,%left,numberstyle=\tiny,
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basewidth={.5em, .4em},
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showstringspaces=false,
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emphstyle=\color{red!50!white}}
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\pgfmathdeclarefunction{gauss}{2}{%
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\pgfmathparse{1/(#2*sqrt(2*pi))*exp(-((x-#1)^2)/(2*#2^2))}%
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}
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\AtBeginSection[]{
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\frame{
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\tableofcontents[sectionstyle=show/hide, subsectionstyle=show/show/hide]}}
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% \setbeamertemplate{headline}{
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% \begin{beamercolorbox}{section in head}
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% \vskip5pt\insertsectionnavigationhorizontal{\paperwidth}{}{}\vskip2pt
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% \end{beamercolorbox}
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% }
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\setbeamertemplate{footline}{\vskip-2pt\hfill\insertframenumber$\;$\vskip2pt}
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\title{How to know what to archive}
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\author{Nora Wickelmaier}
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\date{\today}
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\begin{document}
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\begin{frame}{}
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\thispagestyle{empty}
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\titlepage
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\end{frame}
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\begin{frame}{The basics}
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Data
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\begin{itemize}
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\item Keep your raw data in a separate folder
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\item If your raw data \emph{do not contain any personal data} submit them
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with your analysis-ready data files
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\item Submit the analysis script that got your raw data to
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``analysis-ready`` (or at least a description of the process)\pause\hfill
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{\bf\color{iwmpurple} Check out our Research Data Policy!}
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\end{itemize}
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\pause
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Material
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\begin{itemize}
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\item Submit all materials that have been used to create these data
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\begin{itemize}
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\item Questionnaires
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\item Program code for experiments
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\item Stimuli presented, e.\,g., pictures or similar
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\item \dots
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\end{itemize}
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\end{itemize}
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\pause
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Documentation
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\begin{itemize}
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\item Add a description of your data and experiment
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\item In its simplest form this can just be a README file, ideally as text
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or PDF file
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\end{itemize}
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\end{frame}
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\begin{frame}[fragile]{Previous folder structure on \texttt{Y:/}}
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\begin{columns}
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\begin{column}{.4\textwidth}
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\begin{tikzpicture}[
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every node/.style = {text width = 3.6cm, align = left},
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every path/.style = {thick, draw}
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]
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\node[text width = 2cm] (top) at (0, 0) {\faIcon{folder} \verb+study+};
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% first level
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\node (n1) at (4, 0) {\faIcon{folder} \verb+data+};
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\node (n2) at (4, -0.7) {\faIcon{folder} \verb+ethik+};
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\node (n3) at (4, -1.4) {\faIcon{folder} \verb+material+};
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\node (n4) at (4, -2.1) {\faIcon{folder} \verb+pub+};
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\node (n5) at (4, -2.8) {\faIcon{folder} \verb+scans+};
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\path (top.east) -- (n1.west);
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\path (top.east) -- (n2.west);
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\path (top.east) -- (n3.west);
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\path (top.east) -- (n4.west);
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\path (top.east) -- (n5.west);
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\end{tikzpicture}
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\end{column}
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\begin{column}{.6\textwidth}
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\begin{itemize}[<+->]
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\item Very basic (and good) folder structure for a research project
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\item Submitting the approval document of our \emph{local} ethics
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committee is now optional, since the connection will be possible via
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your meta data\\
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% $\to$ If the project was evaluated by an external ethics committee it
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% might still be a good idea to submit the approval document
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\item Data and material are the most important folders to help other
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people make sense of your data
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\end{itemize}
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\end{column}
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\end{columns}
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\vfill
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\end{frame}
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\begin{frame}[fragile]{Some additional suggestions}
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\vspace{.2cm}
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\begin{tikzpicture}[
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every node/.style = {text width = 3.6cm, align = left},
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every path/.style = {thick, draw}
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]
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\node[text width = 2cm] (top) at (0, 0) {\faIcon{folder} \verb+study+};
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% first level
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\node (n1) at (4, 0) {\faIcon{folder} \verb+code+};
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\node (n2) at (4, -0.7) {\faIcon{folder} \verb+data+};
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\node (n3) at (4, -1.4) {\faIcon{folder} \verb+material+};
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\node (n4) at (4, -2.1) {\faIcon{folder} \verb+preregistration+};
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\node (file) at (4, -2.8) {\faIcon[regular]{file} \verb+README.md+};
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\path (top.east) -- (n1.west);
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\path (top.east) -- (n2.west);
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\path (top.east) -- (n3.west);
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\path (top.east) -- (n4.west);
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\path (top.east) -- (file.west);
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\end{tikzpicture}
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\pause
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\vfill
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Separate your code from your data folder and add your preregistration for the
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project
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\end{frame}
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\begin{frame}[fragile]{Some additional suggestions}
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\begin{tikzpicture}[
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every node/.style = {text width = 3.6cm, align = left},
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every path/.style = {thick, draw}
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]
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\node[text width = 2cm] (top) at (0, 0) {\faIcon{folder} \verb+study+};
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% first level
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\node (n1) at (4, 0) {\faIcon{folder} \verb+code+};
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\node (n2) at (4, -0.7) {\faIcon{folder} \verb+data+};
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\node (n3) at (4, -1.4) {\faIcon{folder} \verb+material+};
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\node (n4) at (4, -2.1) {\faIcon{folder} \verb+preregistration+};
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\node (file) at (4, -2.8) {\faIcon[regular]{file} \verb+README.md+};
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\path (top.east) -- (n1.west);
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\path (top.east) -- (n2.west);
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\path (top.east) -- (n3.west);
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\path (top.east) -- (n4.west);
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\path (top.east) -- (file.west);
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% second level
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\node[text width = 5cm] (o1) at (10, 0) {\faIcon[regular]{file} \verb+01_preprocessing.R+};
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\node[text width = 5cm] (o2) at (10, -0.7) {\faIcon[regular]{file} \verb+02_descriptives.R+};
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\node[text width = 5cm] (o3) at (10, -1.4) {\faIcon[regular]{file} \verb+03_modeling.R+};
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\node[text width = 5cm] (o4) at (10, -2.1) {\faIcon[regular]{file} \verb+04_plots.R+};
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\path (n1.east) -- (o1.west);
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\path (n1.east) -- (o2.west);
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\path (n1.east) -- (o3.west);
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\path (n1.east) -- (o4.west);
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\end{tikzpicture}
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\vfill
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Separate your code from your data folder and add your preregistration for the
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project
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\end{frame}
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\begin{frame}[fragile]{Some additional suggestions}
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\begin{tikzpicture}[
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every node/.style = {text width = 3.6cm, align = left},
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every path/.style = {thick, draw}
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]
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\node[text width = 2cm] (top) at (0, 0) {\faIcon{folder} \verb+study+};
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% first level
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\node (n1) at (4, 0) {\faIcon{folder} \verb+code+};
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\node (n2) at (4, -0.7) {\faIcon{folder} \verb+data+};
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\node (n3) at (4, -1.4) {\faIcon{folder} \verb+material+};
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\node (n4) at (4, -2.1) {\faIcon{folder} \verb+preregistration+};
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\node (file) at (4, -2.8) {\faIcon[regular]{file} \verb+README.md+};
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\path (top.east) -- (n1.west);
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\path (top.east) -- (n2.west);
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\path (top.east) -- (n3.west);
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\path (top.east) -- (n4.west);
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\path (top.east) -- (file.west);
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% second level
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\node[text width = 6cm] (o1) at (10.5, -0.7) {\faIcon{folder} \verb+01_raw-data+};
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\node[text width = 6cm] (o2) at (10.5, -1.4) {\faIcon{folder} \verb+02_processed-data+};
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\node[text width = 6cm] (o3) at (10.5, -2.1) {\faIcon[regular]{file}
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\verb+codebook_processed-data.pdf+};
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\path (n2.east) -- (o1.west);
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\path (n2.east) -- (o2.west);
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\path (n2.east) -- (o3.west);
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\end{tikzpicture}
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\vfill
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Separate your code from your data folder and add your preregistration for the
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project
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\end{frame}
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\begin{frame}[fragile]{Some additional suggestions}
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\begin{tikzpicture}[
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every node/.style = {text width = 3.6cm, align = left},
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every path/.style = {thick, draw}
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]
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\node[text width = 2cm] (top) at (0, 0) {\faIcon{folder} \verb+study+};
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% first level
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\node (n1) at (4, 0) {\faIcon{folder} \verb+code+};
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\node (n2) at (4, -0.7) {\faIcon{folder} \verb+data+};
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\node (n3) at (4, -1.4) {\faIcon{folder} \verb+material+};
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\node (n4) at (4, -2.1) {\faIcon{folder} \verb+preregistration+};
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\node (file) at (4, -2.8) {\faIcon[regular]{file} \verb+README.md+};
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\path (top.east) -- (n1.west);
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\path (top.east) -- (n2.west);
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\path (top.east) -- (n3.west);
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\path (top.east) -- (n4.west);
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\path (top.east) -- (file.west);
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% second level
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\node[text width = 5cm] (o1) at (10, -1.4) {\faIcon{folder} \verb+stimuli+};
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\node[text width = 5cm] (o2) at (10, -2.1) {\faIcon[regular]{file} \verb+survey01.pdf+};
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\node[text width = 5cm] (o3) at (10, -2.8) {\faIcon[regular]{file} \verb+survey02.pdf+};
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\path (n3.east) -- (o1.west);
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\path (n3.east) -- (o2.west);
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\path (n3.east) -- (o3.west);
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\end{tikzpicture}
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\vfill
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\end{frame}
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\begin{frame}[fragile]{Some additional suggestions}
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\vspace{.4cm}
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\begin{tikzpicture}[
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every node/.style = {text width = 3.6cm, align = left},
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every path/.style = {thick, draw}
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]
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\node[text width = 2cm] (top) at (0, 0) {\faIcon{folder} \verb+study+};
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% first level
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\node (n1) at (4, 0) {\faIcon{folder} \verb+code+};
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\node (n2) at (4, -0.7) {\faIcon{folder} \verb+data+};
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\node (n3) at (4, -1.4) {\faIcon{folder} \verb+material+};
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\node (n4) at (4, -2.1) {\faIcon{folder} \verb+preregistration+};
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\node (file) at (4, -2.8) {\faIcon[regular]{file} \verb+README.md+};
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\path (top.east) -- (n1.west);
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\path (top.east) -- (n2.west);
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\path (top.east) -- (n3.west);
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\path (top.east) -- (n4.west);
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\path (top.east) -- (file.west);
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% second level
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\node[text width = 6cm] (o1) at (10.5, -2.1) {\faIcon[regular]{file} \verb+2024-06-11_prereg_study.pdf+};
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\path (n4.east) -- (o1.west);
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\end{tikzpicture}
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\pause
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\vfill
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A preregistration usually contains all important information like what
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variables have been collected, what were the hypotheses, etc.
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\end{frame}
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\begin{frame}[fragile]{Some additional suggestions}
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\begin{columns}
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\begin{column}{.45\textwidth}
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\begin{tikzpicture}[
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every node/.style = {text width = 3.6cm, align = left},
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every path/.style = {thick, draw}
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]
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\node[text width = 2cm] (top) at (0, 0) {\faIcon{folder} \verb+study+};
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% first level
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\node (n1) at (4, 0) {\faIcon{folder} \verb+code+};
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\node (n2) at (4, -0.7) {\faIcon{folder} \verb+data+};
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||||||
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\node (n3) at (4, -1.4) {\faIcon{folder} \verb+material+};
|
||||||
|
\node (n4) at (4, -2.1) {\faIcon{folder} \verb+preregistration+};
|
||||||
|
\node (file) at (4, -2.8) {\faIcon[regular]{file} \verb+README.md+};
|
||||||
|
\path (top.east) -- (n1.west);
|
||||||
|
\path (top.east) -- (n2.west);
|
||||||
|
\path (top.east) -- (n3.west);
|
||||||
|
\path (top.east) -- (n4.west);
|
||||||
|
\path (top.east) -- (file.west);
|
||||||
|
\end{tikzpicture}
|
||||||
|
\end{column}
|
||||||
|
\begin{column}{.55\textwidth}
|
||||||
|
\vspace{-3cm}
|
||||||
|
\begin{itemize}
|
||||||
|
\item Add any additional folders that you need
|
||||||
|
\end{itemize}
|
||||||
|
\end{column}
|
||||||
|
\end{columns}
|
||||||
|
\end{frame}
|
||||||
|
|
||||||
|
|
||||||
|
\begin{frame}[fragile]{Some additional suggestions}
|
||||||
|
\vspace{1cm}
|
||||||
|
\begin{columns}
|
||||||
|
\begin{column}{.45\textwidth}
|
||||||
|
\begin{tikzpicture}[
|
||||||
|
every node/.style = {text width = 3.6cm, align = left},
|
||||||
|
every path/.style = {thick, draw}
|
||||||
|
]
|
||||||
|
\node[text width = 2cm] (top) at (0, 0) {\faIcon{folder} \verb+study+};
|
||||||
|
% first level
|
||||||
|
\node (n1) at (4, 0) {\faIcon{folder} \bf background};
|
||||||
|
\node (n2) at (4, -0.7) {\faIcon{folder} \verb+code+};
|
||||||
|
\node (n3) at (4, -1.4) {\faIcon{folder} \verb+data+};
|
||||||
|
\node (n4) at (4, -2.1) {\faIcon{folder} \verb+material+};
|
||||||
|
\node (n5) at (4, -2.8) {\faIcon{folder} \verb+preregistration+};
|
||||||
|
\node (file) at (4, -3.5) {\faIcon[regular]{file} \verb+README.md+};
|
||||||
|
\path (top.east) -- (n1.west);
|
||||||
|
\path (top.east) -- (n2.west);
|
||||||
|
\path (top.east) -- (n3.west);
|
||||||
|
\path (top.east) -- (n4.west);
|
||||||
|
\path (top.east) -- (n5.west);
|
||||||
|
\path (top.east) -- (file.west);
|
||||||
|
\end{tikzpicture}
|
||||||
|
\end{column}
|
||||||
|
\begin{column}{.55\textwidth}
|
||||||
|
\vspace{-2.5cm}
|
||||||
|
\begin{itemize}
|
||||||
|
\item Add any additional folders that you need
|
||||||
|
\item Maybe a folder \verb+background+ with a PhD expos{\'e} or a grant
|
||||||
|
application (or both)
|
||||||
|
\end{itemize}
|
||||||
|
\end{column}
|
||||||
|
\end{columns}
|
||||||
|
\vfill
|
||||||
|
\end{frame}
|
||||||
|
|
||||||
|
\begin{frame}[fragile]{Some additional suggestions}
|
||||||
|
\vspace{.5cm}
|
||||||
|
\begin{columns}
|
||||||
|
\begin{column}{.45\textwidth}
|
||||||
|
\begin{tikzpicture}[
|
||||||
|
every node/.style = {text width = 3.6cm, align = left},
|
||||||
|
every path/.style = {thick, draw}
|
||||||
|
]
|
||||||
|
\node[text width = 2cm] (top) at (0, 0) {\faIcon{folder} \verb+study+};
|
||||||
|
% first level
|
||||||
|
\node (n1) at (4, 0) {\faIcon{folder} \verb+code+};
|
||||||
|
\node (n2) at (4, -0.7) {\faIcon{folder} \verb+data+};
|
||||||
|
\node (n3) at (4, -1.4) {\faIcon{folder} \verb+material+};
|
||||||
|
\node (n4) at (4, -2.1) {\faIcon{folder} \verb+preregistration+};
|
||||||
|
\node (n5) at (4, -2.8) {\faIcon{folder} \bf software};
|
||||||
|
\node (file) at (4, -3.5) {\faIcon[regular]{file} \verb+README.md+};
|
||||||
|
\path (top.east) -- (n1.west);
|
||||||
|
\path (top.east) -- (n2.west);
|
||||||
|
\path (top.east) -- (n3.west);
|
||||||
|
\path (top.east) -- (n4.west);
|
||||||
|
\path (top.east) -- (n5.west);
|
||||||
|
\path (top.east) -- (file.west);
|
||||||
|
\end{tikzpicture}
|
||||||
|
\end{column}
|
||||||
|
\begin{column}{.55\textwidth}
|
||||||
|
\begin{itemize}
|
||||||
|
\item Add any additional folders that you need
|
||||||
|
\item Maybe a folder \verb+background+ with a PhD expos{\'e} or a grant
|
||||||
|
application (or both)
|
||||||
|
\item Or a folder \verb+software+ with Python or Matlab code that you
|
||||||
|
wrote for your experiment
|
||||||
|
\item \dots
|
||||||
|
\end{itemize}
|
||||||
|
\vfill
|
||||||
|
\end{column}
|
||||||
|
\end{columns}
|
||||||
|
\end{frame}
|
||||||
|
|
||||||
|
|
||||||
|
\begin{frame}{}
|
||||||
|
{}
|
||||||
|
\begin{center}
|
||||||
|
{\Huge\color{iwmblue} Don't overthink it and use common sense.\\
|
||||||
|
\vspace{1cm}\pause
|
||||||
|
Then add everything that you think a colleague needs to understand what you
|
||||||
|
did.}
|
||||||
|
\end{center}
|
||||||
|
|
||||||
|
\end{frame}
|
||||||
|
|
||||||
|
\end{document}
|
||||||
|
|
||||||
@ -7,7 +7,7 @@
|
|||||||
| 2024-06-10 | Data organisation |
|
| 2024-06-10 | Data organisation |
|
||||||
| 2024-06-24 | Data sharing |
|
| 2024-06-24 | Data sharing |
|
||||||
| 2024-07-08 | Clean coding |
|
| 2024-07-08 | Clean coding |
|
||||||
| 2024-07-22 | Version control |
|
| 2024-07-22 | Archiving data at the IWM |
|
||||||
|
|
||||||
# Literature
|
# Literature
|
||||||
|
|
||||||
|
|||||||
Loading…
Reference in New Issue
Block a user