Submission scientific data
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# Contributing to preprocessing
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Thank you for considering contributing to `preprocessing`!
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Your input helps make this package robust, reliable, and extensible for the community.
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Please follow these guidelines to ensure a smooth and constructive contribution process.
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## How to contribute
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### 1. Clone your fork
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Clone the repository from your own GitHub account to your local machine:
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```bash
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git clone https://gitea.iwm-tuebingen.de/AG4/preprocessing.git
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cd preprocessing
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```
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### 2. Create a feature branch
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Create a new branch for the changes you intend to make. This keeps your modifications separate from the `main` branch.
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```bash
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git checkout -b feature/your-feature-name
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```
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Please ensure that your branch name is descriptive of the changes you are making, such as `feature/calculation-of-subscales` or `bugfix/fix-data-validation`.
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### 3. Make your changes
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- Implement your changes in the appropriate files inside `src/`.
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- Update or create tests under `tests/` as needed.
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### 4. Format and lint your code
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Ensure that your code is correctly formatted and adheres to project style guidelines.
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This helps maintain code consistency across the repository.
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Note that `black` for formatting and `ruff` for linting and the `pytest` tests should all be run via a pre-commit hook.
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In order to do this, you need to set `pre-commit` up in your local repository
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(it should be installed via the dev dependencies already).
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To set up `pre-commit`, run the following command in your terminal:
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```bash
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pre-commit install
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```
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If you need to run it for existing code, you can do so running
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```bash
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pre-commit run --all-files
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```
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This will automatically format and lint your code according to the project's standards.
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For manual checks and formatting:
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Format the code using `black`:
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```bash
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black .
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ruff check
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ruff check --fix
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ruff format
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```
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These tools are included in the [project.optional-dependencies.dev] section of pyproject.toml.
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To install them for development, use:
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```bash
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pip install -e .[dev]
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```
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### 5. Run the tests
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Ensure that all tests pass before submitting your changes. We use pytest for testing.
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```bash
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pytest
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```
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If any tests fail, fix the issues before proceeding.
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### 6. Commit your changes
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Once you are satisfied with your changes, commit them to your feature branch:
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```bash
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git add .
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git commit -m "Add your commit message here"
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```
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Make sure to write a clear and concise commit message that describes the changes you made.
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### 7. Push your changes
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Push your changes to your branch:
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```bash
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git push origin feature/your-feature-name
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```
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### 8. Create a Pull Request (PR)
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Navigate to the [main repository](https://gitea.iwm-tuebingen.de/HMC/preprocessing)
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and open a pull request (PR) to the `main` branch.
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The PR should describe the changes you made and why they are useful.
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- Be sure to include a clear, concise description of your changes in the PR.
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- If applicable, link to relevant issues in the PR description.
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### 9. Review Process
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After submitting your PR, a maintainer will review your changes. The review process may involve:
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- Asking for changes or clarifications.
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- Reviewing code style, formatting, and test coverage.
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- Discussing the approach or implementation.
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Once your PR is approved, it will be merged into the main branch.
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## Pull Request Guidelines
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- Include tests: Ensure that your changes come with appropriate test coverage.
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- Follow coding standards: Follow the code style and formatting guidelines outlined in the project.
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- Single feature per PR: Each PR should address a single feature or bug fix.
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- Small, focused PRs: Keep your PRs small and focused to make reviewing easier.
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## Reporting Bugs
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If you find a bug in the software:
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- [Search existing issues](https://gitea.iwm-tuebingen.de/HMC/preprocessing/issues): Before opening a new bug report, check if the issue has already been reported.
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- Open a new issue: If the issue hasn't been reported yet, open a new issue with the following information:
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- A clear description of the problem.
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- Steps to reproduce the issue.
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- Expected behavior vs. actual behavior.
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- Any error messages or logs.
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## License
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By contributing, you agree that your contributions will be licensed under the same license as the project.
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